PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918237
Common NameARALYDRAFT_918237
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 225aa    MW: 25140.1 Da    PI: 4.9491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918237genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1853102255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+++l+g
  918237  53 IYRGVRQRN-SGKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAALALRG 102
             69****999.7******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.37E-3252112No hitNo description
PfamPF008473.2E-1452102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3253112IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2153112IPR016177DNA-binding domain
PROSITE profilePS5103222.24753110IPR001471AP2/ERF domain
SMARTSM003806.8E-3153116IPR001471AP2/ERF domain
PRINTSPR003678.4E-95465IPR001471AP2/ERF domain
PRINTSPR003678.4E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNPFYSAFSD SFLSISDDRS PVSDSSECSP KLASSCPKKR AGRKKFRETR HPIYRGVRQR  60
NSGKWVCEVR EPNKKSRIWL GTFPTVEMAA RAHDVAALAL RGRSACLNFA DSAWRLRIPE  120
TTCPKEIQKA AAEAAMAFQN ESMTEGSKTA AEVEAEAAGE GERERERRVE EQSSVFYMDE  180
EALLGMPNFF ENMAEGMLLP PPEIGWNHND FDGDADVSLW SFDD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5231620.0EF523162.1 Arabidopsis thaliana ecotype Gr-1 C-repeat binding factor 4 (CBF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865886.11e-166C-repeat binding factor 4
SwissprotQ9FJ931e-143DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLD7MRL21e-166D7MRL2_ARALL; C-repeat binding factor 4
STRINGscaffold_801637.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-123C-repeat-binding factor 4